fbpx
Connect with us

The Conversation

A layered lake is a little like Earth’s early oceans − and lets researchers explore how oxygen built up in our atmosphere billions of years ago

Published

on

A layered lake is a little like Earth’s early oceans − and lets researchers explore how oxygen built up in our atmosphere billions of years ago

Researchers sample from various layers to analyze back in the lab.
Elizabeth Swanner, CC BY-ND

Elizabeth Swanner, Iowa State University

Little Deming Lake doesn’t get much notice from visitors to Itasca State Park in Minnesota. There’s better boating on nearby Lake Itasca, the headwaters of the Mississippi River. My colleagues and I need to maneuver hundreds of pounds of equipment down a hidden path made narrow by late-summer poison ivy to launch our rowboats.

But modest Deming Lake offers more than meets the eye for me, a geochemist interested in how oxygen built up in the atmosphere 2.4 billion years ago. The absence of oxygen in the deep layers of Deming Lake is something this small body of water has in common with early Earth’s oceans.

On each of our several expeditions here each year, we row our boats out into the deepest part of the lake – over 60 feet (18 meters), despite the lake’s surface area being only 13 acres. We drop an anchor and connect our boats in a flotilla, readying ourselves for the work ahead.

Smooth lake with boats in the distance against woodsy shoreline
Researchers’ boats on Deming Lake.
Elizabeth Swanner, CC BY-ND

Deming Lake is meromictic, a term from Greek that means only partially mixing. In most lakes, at least once a year, the water at the top sinks while the water at the bottom rises because of wind and seasonal temperature changes that affect water’s density. But the deepest waters of Deming Lake never reach the surface. This prevents oxygen in its top layer of water from ever mixing into its deep layer.

Less than 1% of lakes are meromictic, and most that are have dense, salty bottom waters. Deming Lake’s deep waters are not very salty, but of the salts in its bottom waters, iron is one of the most abundant. This makes Deming Lake one of the rarest types of meromictic lakes.

man seated in small boat wearing gloves injecting water into a collection tube
Postdoc researcher Sajjad Akam collects a water sample for chemical analysis back in the lab.
Elizabeth Swanner, CC BY-ND

The lake surface is calm, and the still air is glorious on this cool, cloudless August morning. We lower a 2--long water pump zip-tied to a cable attached to four sensors. The sensors measure the temperature, amount of oxygen, pH and amount of chlorophyll in the water at each layer we encounter. We pump water from the most intriguing layers up to the boat and fill a myriad of bottles and tubes, each destined for a different chemical or biological analysis.

My colleagues and I have homed in on Deming Lake to explore questions about how microbial life adapted to and changed the environmental conditions on early Earth. Our planet was inhabited only by microbes for most of its history. The atmosphere and the oceans’ depths didn’t have much oxygen, but they did have a lot of iron, just like Deming Lake does. By investigating what Deming Lake’s microbes are doing, we can better understand how billions of years ago they helped to transform the Earth’s atmosphere and oceans into what they’re like now.

Layer by layer, into the lake

Two and a half billion years ago, ocean waters had enough iron to form today’s globally distributed rusty iron deposits called banded iron formations that supply iron for the modern global steel industry. Nowadays, oceans have only trace amounts of iron but abundant oxygen. In most waters, iron and oxygen are antithetical. Rapid chemical and biological reactions between iron and oxygen mean you can’t have much of one while the other is present.

The rise of oxygen in the early atmosphere and ocean was due to cyanobacteria. These single-celled organisms emerged at least 2.5 billion years ago. But it took roughly 2 billion years for the oxygen they produce via photosynthesis to build up to levels that allowed for the first animals to appear on Earth.

water concentrated on a filter looks pale green
Chlorophyll colors water from the lake slightly green.
Elizabeth Swanner, CC BY-ND

At Deming Lake, my colleagues and I pay special attention to the water layer where the chlorophyll readings jump. Chlorophyll is the pigment that makes plants green. It harnesses sunlight energy to turn water and carbon dioxide into oxygen and sugars. Nearly 20 feet (6 meters) below Deming’s surface, the chlorophyll is in cyanobacteria and photosynthetic algae, not plants.

But the curious thing about this layer is that we don’t detect oxygen, despite the abundance of these oxygen-producing organisms. This is the depth where iron concentrations start to climb to the high levels present at the lake’s bottom.

This high-chlorophyll, high-iron and low-oxygen layer is of special interest to us because it might us understand where cyanobacteria lived in the ancient ocean, how well they were growing and how much oxygen they produced.

We the reason cyanobacteria gather at this depth in Deming Lake is that there is more iron there than at the top of the lake. Just like humans need iron for red blood cells, cyanobacteria need lots of iron to help catalyze the reactions of photosynthesis.

A likely reason we can’t measure any oxygen in this layer is that in addition to cyanobacteria, there are a lot of other bacteria here. After a good long life of a few days, the cyanobacteria die, and the other bacteria feed on their remains. These bacteria rapidly use up any oxygen produced by still photosynthesizing cyanobacteria the way a fire does as it burns through wood.

We know there are lots of bacteria here based on how cloudy the water is, and we see them when we inspect a drop of this water under a microscope. But we need another way to measure photosynthesis besides measuring oxygen levels.

Long-running lakeside laboratory

The other important function of photosynthesis is converting carbon dioxide into sugars, which eventually are used to make more cells. We need a way to track whether new sugars are being made, and if they are, whether it’s by photosynthetic cyanobacteria. So we fill glass bottles with samples of water from this lake layer and seal them tight with rubber stoppers.

We the 3 miles back to the Itasca Biological Station and Laboratories where we will set up our experiments. The station opened in 1909 and is home base for us this week, providing comfy cabins, warm meals and this laboratory .

In the lab, we inject our glass bottle with carbon dioxide that carries an isotopic tracer. If cyanobacteria grow, their cells will incorporate this isotopic marker.

We had a little help to formulate our questions and experiments. of Minnesota attending summer field courses collected decades worth of data in Itasca State Park. A diligent university librarian digitized thousands of those students’ final papers.

My students and I pored over the papers concerning Deming Lake, many of which tried to determine whether the cyanobacteria in the chlorophyll-rich layer are doing photosynthesis. While most indicated yes, those students were measuring only oxygen and got ambiguous results. Our use of the isotopic tracer is trickier to implement but will give clearer results.

woman holds a clear plastic bag aloft, she and man are seated in boat
Graduate students Michelle Chamberlain and Zackry Stevenson about to sink the bottles for incubation in Deming Lake.
Elizabeth Swanner, CC BY-ND

That afternoon, we’re back on the lake. We toss an anchor; attached to its rope is a clear plastic bag holding the sealed bottles of lake water now amended with the isotopic tracer. They’ll spend the night in the chlorophyll-rich layer, and we’ll retrieve them after 24 hours. Any longer than that and the isotopic label might end up in the bacteria that eat the dying cyanobacteria instead of the cyanobacteria themselves. We tie off the rope to a floating buoy and head back to the station’s dining hall for our evening meal.

Iron, chlorophyll, oxygen

The next morning, as we wait for the bottles to finish their incubation, we collect water from the different layers of the lake and add some chemicals that kill the cells but preserve their bodies. We’ll look at these samples under the microscope to figure out how many cyanobacteria are in the water, and we’ll measure how much iron is inside the cyanobacteria.

That’s easier said than done, because we have to first separate all the “needles” (cyanobacteria) from the “hay” (other cells) and then clean any iron off the outside of the cyanobacteria. Back at Iowa State University, we’ll shoot the individual cells one by one into a flame that incinerates them, which liberates all the iron they contain so we can measure it.

rowboat with one woman in it on a lake with woodsy shoreline
Biogeochemist Katy Sparrow rows a research vessel to shore.
Elizabeth Swanner, CC BY-ND

Our scientific hunch, or hypothesis, is that the cyanobacteria that in the chlorophyll- and iron-rich layer will contain more iron than cyanobacteria that live in the top lake layer. If they do, it will help us establish that greater access to iron is a motive for living in that deeper and dimmer layer.

These experiments won’t tell the whole story of why it took so long for Earth to build up oxygen, but they will help us to understand a piece of it – where oxygen might have been produced and why, and what happened to oxygen in that .

Deming Lake is quickly becoming its own attraction for those with a curiosity about what goes on beneath its tranquil surface – and what that might be able to tell us about how new forms of life took hold long ago on Earth.The Conversation

Elizabeth Swanner, Associate Professor of Geology, Iowa State University

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Did you miss our previous article…
https://www.biloxinewsevents.com/?p=298489

The Conversation

Americans own guns to protect themselves from psychological as well as physical threats

Published

on

theconversation.com – Nick Buttrick, Assistant Professor of Psychology, of Wisconsin- – 2024-10-31 07:24:00

Many gun owners cite protection as a reason to carry a firearm.

RJ Sangosti/MediaNews Group/The Denver Post via Getty Images

Nick Buttrick, University of Wisconsin-Madison

Kamala Harris, Donald Trump, Tim Walz and JD Vance all have something in common. All four of them, along with an estimated 42% of American adults, have lived in a home with at least one gun.

Gun ownership in the United States is widespread and cuts across all sorts of cultural divides – including race, class and political ideology. Like all mass experiences in American , owning a gun can mean very different things to different people.

One thing that American gun owners tend to agree on, no matter their differences, is that guns are for personal protection. In a 2023 Pew survey, 72% of gun owners reported that they owned a firearm at least in part for protection, and 81% of gun owners reported that owning a gun helped them to feel safer. This perspective contrasts to that of gun owners in other developed economies, who generally report that guns are more dangerous than safe and that they own a gun for some other reason.

I’m a psychologist who studies contemporary society. In the lab, my colleagues and I have been investigating this feeling of safety that American gun owners report. We’re trying to get a more complete sense of just what people are using their firearms to protect against. Our research suggests it goes much deeper than physical threats.

man wearing a holstered gun sitting down to eat at kitchen table with two others

Social scientists are exploring the motivations and effects of owning a gun.

Cécile Clocheret/AFP via Getty Images

Protection goes beyond the physical

By combining social-scientific research on firearms ownership with a raft of interviews we’ve conducted, we’ve developed a theory that gun owners aren’t just protecting against the specific threat of physical violence. Owners are also using a gun to protect their psychological selves. Owning a gun helps them feel more in control of the world around them and more able to live meaningful, purposeful lives that connect to the people and communities they care for.

This sort of protection may be especially appealing to those who think that the normal institutions of society – such as the police or the government – are either unable or unwilling to keep them safe. They feel they need to take protection into their own hands.

This use of a deadly weapon to provide comfort and solace may come at a cost, however, as firearms often bring a heightened sense of vigilance with them. Firearm instructors frequently teach owners to be especially aware of their environment and all the potential dangers and threats within. When gun owners look for danger, they often are more likely to find it.

Gun owners may end up perceiving the world as a more dangerous place, institutions as more uncaring or incompetent, and their own private actions as all the more important for securing their lives and their livelihoods.

How gun owners feel during daily life

What does this cycle of protection and threat look like in everyday life? My colleagues and I recently ran a study to investigate. We’re still undergoing peer , so our work is not final yet.

We recruited a group of over 150 firearms owners who told us that they regularly carry their guns, along with over 100 demographically Americans who have never owned a gun. Over two weeks, our research team texted the participants at two random times each day, asking them to fill out a survey telling us what they were doing and how they were feeling.

To get a sense of how guns change the psychological landscape of their owners, we divided our gun-carrying group into two. When we texted one half of the group, before we asked any other questions, we simply asked whether they had their gun accessible and why they’d made that . For the other half of our gun-owning participants, and for our non-gun-owning control group, firearms and firearm carrying never came up.

When subtly reminded of guns in general – regardless of whether their gun was accessible – our participants reported feeling more safe and in control and that their lives were more meaningful. Thanks to our random-assignment procedure, we can be pretty confident that it was thinking about guns, as opposed to any differences in the underlying groups themselves, that caused this particular increase in psychological well-being.

About half of the times that we texted, the gun owners told us that they had a gun accessible at that moment. When a gun was handy, our participants told us that they were feeling more vigilant and anxious, and that their immediate situation was more chaotic. This result didn’t seem to be driven by owners choosing to have guns available when they were putting themselves into objectively more dangerous situations: We found the same pattern when we looked just at moments when our participants were sitting at home, watching television.

Raising fear and promising rescue

Contemporary American gun ownership may have conflicting messages embedded within it. First, a gun is a thing you can use to bolster your fundamental psychological needs to feel safe, to feel in control and to feel like you matter and belong. Second, a gun focuses your attention on the dangers of the world.

By both fueling a sense of danger and holding out the promise of rescuing you from the fear, messaging around guns may end up locking some owners into a sort of doom loop.

woman posing in front of fireplace holding her pistol

A sense of responsibility goes along with gun ownership for the vast majority of Americans who own a firearm.

Matt McClain/The Washington Post via Getty Images

My collaborators and I are currently exploring whether stressing other parts of gun ownership may owners to move beyond this negative spiral. For instance, while owners often about “danger,” they also talk frequently about “responsibility.”

Being a responsible gun owner is central to many owners’ identities. In one study, 97% of owners reported that they were “more responsible than the average gun owner,” and 23% rated themselves as being in the top 1% of responsibility overall. This, of course, is statistically impossible.

To more fully understand the many ways responsible firearm ownership can look, we are in the process of interviewing gun owners from all around the state of Wisconsin, a notably diverse state when it comes to gun ownership. We’re tapping into as many of the ways of owning a gun as we can, talking with protective owners, hunters, sport shooters, collectors, folks in urban areas, folks in rural areas, men, women, young people, old people, liberals, conservatives, and, of course, trying to capture the complex ways that race shapes ownership.

Who do gun owners feel they are responsible for? What kinds of actions do they think responsible owners take?

We hope to learn more about the many different ways that people conceptualize what a gun can do for them. American gun cultures are complex and distinct things. By exploring the worldviews that firearm ownership, we can better understand what it means to live in the U.S. today.The Conversation

Nick Buttrick, Assistant Professor of Psychology, University of Wisconsin-Madison

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Read More

The post Americans own guns to protect themselves from psychological as well as physical threats appeared first on theconversation.com

Continue Reading

The Conversation

In Hawaii, parasites and viruses team up in the battle against fruit flies – an entomologist explains the implication for global pest control

Published

on

theconversation.com – Kelsey Coffman, Assistant Professor of Entomology & Plant Pathology, of Tennessee – 2024-10-31 07:25:00

Diachasmimorpha longicaudata, a parasitoid wasp that helps control pests.

Sheina Sim, CC BY

Kelsey Coffman, University of Tennessee

Take a stroll along one of the beaches on Hawaii Island in late summer, and you’ll likely stumble upon almond-shaped fruits lying in the sand. Known as false kamani nuts, or tropical almonds, they fall from tall, shady Terminalia catappa trees that line the many picturesque ocean views on the island.

But what may not be clear to the casual beachgoer is that there’s a fight for survival occurring within the flesh of these unassuming fruits. Tropical almonds are one of many active battlegrounds in a war between a global agricultural pest, a parasitic wasp and a beneficial virus.

As an entomologist who studies insect viruses, I want to untangle the complex interactions that insects have evolved with microbes. The findings might researchers tackle global food security issues.

A global pest challenge

At the center of this conflict are invasive fruit flies in the Tephritidae, many of which have spread across the globe and wreak havoc on hundreds of commercial fruits and vegetables.

In Hawaii, several species of tephritid fruit fly invaded, starting in the late 1800s. They have caused major economic losses to fruit production across the islands. Scientists and fruit growers have undertaken enormous efforts to control these flies since their initial introductions, but they remain a serious economic problem.

One reliable method of control has been to release tiny insects called parasitoid wasps into the wild that can hunt down immature fruit flies and target them for annihilation. The term parasitoid an organism that spends its as a parasite and eventually kills its host.

Parasitoid wasps use an elongated stinger, known as an ovipositor, to drill into fruits where flies are developing and pierce the fly’s body to lay an egg within. Wasp eggs hatch inside the fly host and gradually devour the entire fly from the inside out.

Human use of parasitoid wasps or other natural enemies to control pest populations is known as biological control, or biocontrol. It was so successful in Hawaii that several species of parasitoid wasp have established wild populations on the islands. They have helped continuously suppress multiple fruit fly pests to this day.

The release of nonnative insects for biocontrol could have unforeseen negative consequences for local ecosystems. Therefore, federal agencies like the U.S. Department of Agriculture have strict regulations for new and existing biocontrol programs.

The enemy of my enemy is my friend

So, how do wasps achieve the impressive feat of reducing fruit fly pest populations? Once laid inside a fly host, the wasp must face the fly’s immune system, which will try to suffocate the egg before it hatches.

This inhospitable has forced wasps to evolve an arsenal of microscopic substances, also known as molecular factors, to combat fly defenses. These include a cocktail of different molecules introduced by the wasp mother at the time of egg-laying.

The goal of these factors is to manipulate the fruit fly’s physiological processes, like its development from egg to adult and its immune response to invading parasites. By interacting with molecular components, like proteins, that make up insect physiological pathways, parasitoid wasp factors can delay insect host development and suppress host immunity to allow the wasp offspring to feed on fly tissue unharmed.

This is the origin story of an unlikely partnership that many species of parasitoid wasp have formed with beneficial viruses. Virus particles multiply to massive quantities within the reproductive organs of female wasps during their development. Wasp mothers then use their ovipositor like a hypodermic needle to inject virus particles into host insects during egg-laying.

The virus particles turn into biological weapons that infect cells of the wasp’s host. This infection disrupts processes like the fly’s immune response. Developing wasps benefit from the virus’s activity and return the favor by passing on the virus to future wasp generations.

Not all heroes wear capes

Diachasmimorpha longicaudata is a small, bright orange wasp with a distinctively long ovipositor. The literal translation of longicaudata is “long-tailed” in Latin. But don’t let its charismatic appearance fool you.

D. longicaudata is ferocious in its ability to feast on several species of fruit fly pests, such as the Mediterranean fruit fly, Ceratitis capitata, and the oriental fruit fly, Bactrocera dorsalis. Because of D. longicaudata’s ability to attack a wide variety of fruit fly pests, pest management specialists around the world have released the wasps into agricultural ecosystems, where they dependably establish new populations and sustained pest control.

Like many parasitoids, D. longicaudata has formed an alliance with a virus known as Diachasmimorpha longicaudata entomopoxvirus, or DlEPV.

DlEPV replicates within the venom gland of female wasps, which stores billions of virus particles. Virus particles are so densely packed in there that they often cause the venom gland to appear iridescent blue.

DlEPV particles are highly lethal when injected into flies in the lab. The virus freezes the fly’s development and replicates with abandon until the fly’s ultimate demise.

In contrast, the alliance between wasp and virus is so strong that curing D. longicaudata wasps of their DlEPV infection causes the wasp offspring to die inside the fly .

A new potential path forward

My colleagues and I published a study showing that DlEPV may play a critical role in helping D. longicaudata make a meal out of so many different fruit fly pests. We found a link between D. longicaudata survival and DlEPV lethality within different fruit fly host species.

When we infected C. capitata and B. dorsalis flies with DlEPV, the virus successfully replicated and killed large swaths of fly hosts. However, DlEPV couldn’t replicate within the melon fly, Zeugodacus cucurbitae, a fly species that D. longicaudata wasps cannot use as hosts.

These findings shine new light on the effect viruses have on host-parasite rivalries. The presence of these viruses could influence how useful parasitoid wasps are in getting rid of fruit fly pests. In the case of D. longicaudata, its associated virus may be responsible for the decades of reliable aid this wasp has provided to fruit fly biocontrol programs around the world.

This work has also revealed a new potential tool in the war against fruit fly pests. DlEPV is now known as a lethal enemy for several of the world’s most destructive pest species. If researchers can determine precisely how DlEPV exploits fly hosts at a molecular level, they could one day incorporate the same strategies that this virus uses into new fruit fly pest control methods.The Conversation

Kelsey CoffmanUniversity of Tennessee

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Read More

The post In Hawaii, parasites and viruses team up in the battle against fruit flies – an entomologist explains the implication for global pest control appeared first on .com

Continue Reading

The Conversation

Fighting antibiotic resistance at the source – using machine learning to identify bacterial resistance genes and the drugs to block them

Published

on

theconversation.com – Abdullahi Tunde Aborode, Mississippi – 2024-10-30 07:41:00

Current methods of identifying resistance mutations in microbes can miss other ways resistance can develop.
koto_feja/iStock via Getty Images Plus

Abdullahi Tunde Aborode, Mississippi State University

Antibiotic resistance is a growing public health problem around the world. When bacteria like E. coli no longer respond to antibiotics, infections become harder to treat.

To develop new antibiotics, researchers typically identify the genes that make bacteria resistant. Through laboratory experiments, they observe how bacteria respond to different antibiotics and look for mutations in the genetic makeup of resistant strains that allow them to survive.

While effective, this method can be time-consuming and may not always capture the full picture of how bacteria become resistant. For example, changes in how genes work that don’t involve mutations can still influence resistance. Bacteria can also exchange resistance genes between each other, which may not be detected if only focusing on mutations within a single strain.

My colleagues and I developed a new approach to identify E. coli resistance genes by computer modeling, allowing us to design new compounds that can block these genes and make existing treatments more effective.

Identifying resistance

To predict which genes contribute to resistance, we analyzed the genomes of various E. coli strains to identify genetic patterns and markers associated with resistance. We then used machine learning algorithms trained on existing data to highlight novel genes or mutations shared across resistant strains that might contribute to resistance.

Microscopy image of rod-shaped E. coli, colored orange
E. coli is one of many bacterial species developing resistance to common antibiotics.
National Institute of Allergy and Infectious Diseases/National Institutes of Health via Flickr, CC BY-NC

After identifying resistance genes, we designed inhibitors that specifically target and block the proteins these genes produce. By analyzing the structure of the proteins these genes code for, we were able to optimize our inhibitors to strongly bind to these specific proteins.

To reduce the likelihood that bacteria would evolve resistance to these inhibitors, we targeted regions of their genome that code for proteins critical to their survival. By interfering with how bacteria carry out important functions, it makes it more difficult for them to develop mechanisms to compensate. We also prioritized compounds that work differently from existing antibiotics to minimize cross-resistance.

Finally, we tested how effectively our inhibitors could overcome antibiotic resistance in E. coli. We used computer simulations to assess how strongly a number of inhibitors bind to target proteins over time. One inhibitor called hesperidin was able to strongly bind to the three genes in E. coli involved in resistance that we identified, suggesting it may be able to combat antibiotic-resistant strains.

A global threat

The World Organization ranks antimicrobial resistance as one of the top 10 threats to global health. In 2019, bacterial antibiotic resistance killed an estimated 4.95 million people worldwide.

By targeting the specific genes responsible for resistance to existing , our approach could to treatments for challenging bacterial infections that are not only more effective but also less likely to contribute to further resistance. It can also help researchers keep up with bacterial threats as they evolve.

Some microbes can transfer resistance to other microbes.

Our predictive approach could be adapted to other bacterial strains, allowing for more personalized treatment strategies. In the future, could potentially tailor antibiotic treatments based on the specific genetic makeup of the bacteria causing the infection, potentially leading to better outcomes.

As antibiotic resistance continues to rise globally, our findings may a crucial tool in the fight against this threat. Further is needed before our methods can be used in the clinic. But by staying ahead of bacterial evolution, targeted inhibitors could help preserve the efficacy of existing antibiotics and reduce the spread of resistant strains.The Conversation

Abdullahi Tunde Aborode, , Mississippi State University

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Read More

The post Fighting antibiotic resistance at the source – using machine learning to identify bacterial resistance genes and the drugs to block them appeared first on .com

Continue Reading

Trending